230 lines
6.0 KiB
C
230 lines
6.0 KiB
C
/*
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* Copyright 1997, Regents of the University of Minnesota
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*
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* compress.c
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*
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* This file contains code for compressing nodes with identical adjacency
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* structure and for prunning dense columns
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*
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* Started 9/17/97
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* George
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*/
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#include "metislib.h"
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/*************************************************************************/
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/*! This function compresses a graph by merging identical vertices
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The compression should lead to at least 10% reduction.
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The compressed graph that is generated has its adjwgts set to 1.
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\returns 1 if compression was performed, otherwise it returns 0.
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*/
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/**************************************************************************/
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graph_t *CompressGraph(ctrl_t *ctrl, idx_t nvtxs, idx_t *xadj, idx_t *adjncy,
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idx_t *vwgt, idx_t *cptr, idx_t *cind)
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{
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idx_t i, ii, iii, j, jj, k, l, cnvtxs, cnedges;
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idx_t *cxadj, *cadjncy, *cvwgt, *mark, *map;
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ikv_t *keys;
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graph_t *graph=NULL;
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mark = ismalloc(nvtxs, -1, "CompressGraph: mark");
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map = ismalloc(nvtxs, -1, "CompressGraph: map");
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keys = ikvmalloc(nvtxs, "CompressGraph: keys");
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/* Compute a key for each adjacency list */
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for (i=0; i<nvtxs; i++) {
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k = 0;
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for (j=xadj[i]; j<xadj[i+1]; j++)
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k += adjncy[j];
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keys[i].key = k+i; /* Add the diagonal entry as well */
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keys[i].val = i;
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}
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ikvsorti(nvtxs, keys);
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l = cptr[0] = 0;
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for (cnvtxs=i=0; i<nvtxs; i++) {
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ii = keys[i].val;
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if (map[ii] == -1) {
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mark[ii] = i; /* Add the diagonal entry */
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for (j=xadj[ii]; j<xadj[ii+1]; j++)
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mark[adjncy[j]] = i;
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map[ii] = cnvtxs;
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cind[l++] = ii;
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for (j=i+1; j<nvtxs; j++) {
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iii = keys[j].val;
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if (keys[i].key != keys[j].key || xadj[ii+1]-xadj[ii] != xadj[iii+1]-xadj[iii])
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break; /* Break if keys or degrees are different */
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if (map[iii] == -1) { /* Do a comparison if iii has not been mapped */
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for (jj=xadj[iii]; jj<xadj[iii+1]; jj++) {
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if (mark[adjncy[jj]] != i)
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break;
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}
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if (jj == xadj[iii+1]) { /* Identical adjacency structure */
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map[iii] = cnvtxs;
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cind[l++] = iii;
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}
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}
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}
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cptr[++cnvtxs] = l;
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}
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}
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IFSET(ctrl->dbglvl, METIS_DBG_INFO,
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printf(" Compression: reduction in # of vertices: %"PRIDX".\n", nvtxs-cnvtxs));
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if (cnvtxs < COMPRESSION_FRACTION*nvtxs) {
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/* Sufficient compression is possible, so go ahead and create the
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compressed graph */
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graph = CreateGraph();
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cnedges = 0;
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for (i=0; i<cnvtxs; i++) {
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ii = cind[cptr[i]];
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cnedges += xadj[ii+1]-xadj[ii];
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}
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/* Allocate memory for the compressed graph */
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cxadj = graph->xadj = imalloc(cnvtxs+1, "CompressGraph: xadj");
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cvwgt = graph->vwgt = ismalloc(cnvtxs, 0, "CompressGraph: vwgt");
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cadjncy = graph->adjncy = imalloc(cnedges, "CompressGraph: adjncy");
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graph->adjwgt = ismalloc(cnedges, 1, "CompressGraph: adjwgt");
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/* Now go and compress the graph */
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iset(nvtxs, -1, mark);
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l = cxadj[0] = 0;
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for (i=0; i<cnvtxs; i++) {
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mark[i] = i; /* Remove any dioganal entries in the compressed graph */
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for (j=cptr[i]; j<cptr[i+1]; j++) {
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ii = cind[j];
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/* accumulate the vertex weights of the consistuent vertices */
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cvwgt[i] += (vwgt == NULL ? 1 : vwgt[ii]);
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/* generate the combined adjancency list */
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for (jj=xadj[ii]; jj<xadj[ii+1]; jj++) {
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k = map[adjncy[jj]];
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if (mark[k] != i) {
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mark[k] = i;
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cadjncy[l++] = k;
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}
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}
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}
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cxadj[i+1] = l;
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}
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graph->nvtxs = cnvtxs;
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graph->nedges = l;
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graph->ncon = 1;
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SetupGraph_tvwgt(graph);
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SetupGraph_label(graph);
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}
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gk_free((void **)&keys, &map, &mark, LTERM);
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return graph;
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}
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/*************************************************************************/
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/*! This function prunes all the vertices in a graph with degree greater
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than factor*average.
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\returns the number of vertices that were prunned.
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*/
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/*************************************************************************/
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graph_t *PruneGraph(ctrl_t *ctrl, idx_t nvtxs, idx_t *xadj, idx_t *adjncy,
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idx_t *vwgt, idx_t *iperm, real_t factor)
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{
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idx_t i, j, k, l, nlarge, pnvtxs, pnedges;
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idx_t *pxadj, *padjncy, *padjwgt, *pvwgt;
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idx_t *perm;
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graph_t *graph=NULL;
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perm = imalloc(nvtxs, "PruneGraph: perm");
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factor = factor*xadj[nvtxs]/nvtxs;
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pnvtxs = pnedges = nlarge = 0;
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for (i=0; i<nvtxs; i++) {
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if (xadj[i+1]-xadj[i] < factor) {
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perm[i] = pnvtxs;
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iperm[pnvtxs++] = i;
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pnedges += xadj[i+1]-xadj[i];
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}
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else {
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perm[i] = nvtxs - ++nlarge;
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iperm[nvtxs-nlarge] = i;
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}
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}
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IFSET(ctrl->dbglvl, METIS_DBG_INFO,
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printf(" Pruned %"PRIDX" of %"PRIDX" vertices.\n", nlarge, nvtxs));
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if (nlarge > 0 && nlarge < nvtxs) {
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/* Prunning is possible, so go ahead and create the prunned graph */
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graph = CreateGraph();
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/* Allocate memory for the prunned graph*/
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pxadj = graph->xadj = imalloc(pnvtxs+1, "PruneGraph: xadj");
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pvwgt = graph->vwgt = imalloc(pnvtxs, "PruneGraph: vwgt");
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padjncy = graph->adjncy = imalloc(pnedges, "PruneGraph: adjncy");
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graph->adjwgt = ismalloc(pnedges, 1, "PruneGraph: adjwgt");
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pxadj[0] = pnedges = l = 0;
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for (i=0; i<nvtxs; i++) {
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if (xadj[i+1]-xadj[i] < factor) {
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pvwgt[l] = (vwgt == NULL ? 1 : vwgt[i]);
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for (j=xadj[i]; j<xadj[i+1]; j++) {
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k = perm[adjncy[j]];
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if (k < pnvtxs)
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padjncy[pnedges++] = k;
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}
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pxadj[++l] = pnedges;
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}
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}
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graph->nvtxs = pnvtxs;
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graph->nedges = pnedges;
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graph->ncon = 1;
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SetupGraph_tvwgt(graph);
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SetupGraph_label(graph);
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}
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else if (nlarge > 0 && nlarge == nvtxs) {
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IFSET(ctrl->dbglvl, METIS_DBG_INFO,
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printf(" Pruning is ignored as it removes all vertices.\n"));
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nlarge = 0;
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}
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gk_free((void **)&perm, LTERM);
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return graph;
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}
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